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    LOC7485941 transcription factor bHLH49 [ Populus trichocarpa (black cottonwood) ]

    Gene ID: 7485941, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC7485941
    Gene description
    transcription factor bHLH49
    Locus tag
    POPTR_008G113200v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus trichocarpa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (7199649..7204347, complement)
    101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (7225510..7230275, complement)

    Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC7483913 Neighboring gene putative pentatricopeptide repeat-containing protein At1g68930 Neighboring gene uncharacterized LOC127905697 Neighboring gene basic leucine zipper 43

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. Ralph SG, et al. BMC Genomics, 2008 Jan 29. PMID 18230180, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH49

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference P.trichocarpa_v4.1 Primary Assembly

    Genomic

    1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

      Range
      7199649..7204347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024607876.2 → XP_024463644.1  transcription factor bHLH49 isoform X2

      UniProtKB/TrEMBL
      A0A2K1ZFK0
      Conserved Domains (1) summary
      smart00353
      Location:386 → 435
      HLH; helix loop helix domain

    2. XM_024607875.2 → XP_024463643.1  transcription factor bHLH49 isoform X1

      UniProtKB/TrEMBL
      A0A2K1ZFJ7
      Conserved Domains (1) summary
      smart00353
      Location:386 → 435
      HLH; helix loop helix domain
    Nucleotide Protein
    Heading Accession and Version

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