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    LOC4326315 putative transcription factor bHLH041 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326315, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326315
    Gene description
    putative transcription factor bHLH041
    Locus tag
    OSNPB_010575200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1112D09.6
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    Genomic context

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    See LOC4326315 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (22708906..22713265)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (22137964..22142425)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene NDR1/HIN1-like protein 6 Neighboring gene protein ROOT HAIR DEFECTIVE 3-like Neighboring gene putative cyclin-dependent kinase F-2 Neighboring gene DENN domain and WD repeat-containing protein SCD1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Li X, et al. Plant Physiol, 2006 Aug. PMID 16896230, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative transcription factor bHLH041
    Names
    Os01g0575200
    basic helix-loop-helix (bHLH) family protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      22708906..22713265
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775041.3 → XP_015630527.1  putative transcription factor bHLH041

      UniProtKB/TrEMBL
      A0A0P0V4C4, A0A8J8Y7R9, B8AAS9, B9EXN5, Q8S0C6
      Conserved Domains (1) summary
      cd11393
      Location:267 → 319
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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