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    LOC4329768 NAC domain-containing protein 4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329768, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4329768
    Gene description
    NAC domain-containing protein 4-like
    Locus tag
    OSNPB_020579000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves before flowering (RPKM 57.5), roots before flowering (RPKM 31.5) and 3 other tissues See more
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    Genomic context

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    See LOC4329768 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (22740334..22742173)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22258732..22260665)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene casparian strip membrane protein 5 Neighboring gene photosynthetic NDH subunit of lumenal location 2, chloroplastic Neighboring gene 2-hydroxy-palmitic acid dioxygenase MPO1 Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transcription factor MYB106

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAC domain-containing protein 4-like
    Names
    B1267B06.11
    Os02g0579000
    putative OsNAC1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      22740334..22742173
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307272.1 → XP_066163369.1  NAC domain-containing protein 4-like isoform X1

    2. XM_066307273.1 → XP_066163370.1  NAC domain-containing protein 4-like isoform X2

    3. XM_015767903.3 → XP_015623389.1  NAC domain-containing protein 4-like isoform X1

      UniProtKB/TrEMBL
      A0A0P0VKT6, Q0E046
      Conserved Domains (1) summary
      pfam02365
      Location:38 → 163
      NAM; No apical meristem (NAM) protein

    4. XM_015767904.3 → XP_015623390.1  NAC domain-containing protein 4-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0VKT6, Q0E046
      Conserved Domains (1) summary
      pfam02365
      Location:38 → 163
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

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