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    LOC4346333 NAC domain-containing protein 53 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346333, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346333
    Gene description
    NAC domain-containing protein 53
    Locus tag
    OSNPB_080562200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NAC40
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 56.2), roots after flowering (RPKM 52.1) and 6 other tissues See more
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    Genomic context

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    See LOC4346333 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28292872..28297038, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (28145060..28149267, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene expansin-A32-like Neighboring gene malate dehydrogenase [NADP], chloroplastic Neighboring gene protein SENSITIVE TO PROTON RHIZOTOXICITY 2 Neighboring gene BAHD acyltransferase DCR

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAC domain-containing protein 53
    Names
    NAC transcription factor
    Os08g0562200
    P0543D10.8-1
    P0543D10.8-2
    P0604E01.48-1
    P0604E01.48-2
    putative NAC2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28292872..28297038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794024.3 → XP_015649510.1  NAC domain-containing protein 53

      UniProtKB/TrEMBL
      A3BVT0, Q0J3N3, Q6YYW1, Q6YYW2, Q6ZBY3
      Conserved Domains (1) summary
      pfam02365
      Location:22 → 148
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

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