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    LOC4330586 nuclear transcription factor Y subunit B-3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330586, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330586
    Gene description
    nuclear transcription factor Y subunit B-3
    Locus tag
    OSNPB_020725700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsHAP3E; OJ1124_G07.19
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    Genomic context

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    See LOC4330586 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30656026..30657200, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30164298..30165449, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene early nodulin-like protein 15 Neighboring gene tRNA (guanine(9)-N1)-methyltransferase Neighboring gene nuclear transcription factor Y subunit B-1-like Neighboring gene fasciclin-like arabinogalactan protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit B-3
    Names
    HAP3 subunit of HAP complex
    Os02g0725700
    leafy cotyledon1
    nuclear transcription factor Y subunit B-10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30656026..30657200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769434.3 → XP_015624920.1  nuclear transcription factor Y subunit B-3

      UniProtKB/TrEMBL
      A3AAX9, Q6YNJ7, Q6ZFM9
      Conserved Domains (1) summary
      pfam00808
      Location:35 → 100
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    Nucleotide Protein
    Heading Accession and Version

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