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    LOC4330462 basic helix-loop-helix protein 79-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330462, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330462
    Gene description
    basic helix-loop-helix protein 79-like
    Locus tag
    OSNPB_020705500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0680A05.9
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    Genomic context

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    See LOC4330462 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29608606..29611518, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29117058..29119291, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene pheophytinase, chloroplastic Neighboring gene tubby-like F-box protein 5 Neighboring gene universal stress protein PHOS34 Neighboring gene U-box domain-containing protein 6 Neighboring gene uncharacterized LOC136355432

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Li X, et al. Plant Physiol, 2006 Aug. PMID 16896230, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic helix-loop-helix protein 79-like
    Names
    Os02g0705500
    putative bHLH transcription factor
    transcription factor bHLH63

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29608606..29611518 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771995.3 → XP_015627481.1  basic helix-loop-helix protein 79-like

      UniProtKB/Swiss-Prot
      A0A0P0VNF7, B8AH97, B9F210, Q6Z2G7
      Conserved Domains (1) summary
      cd18919
      Location:160 → 242
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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