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    LOC4330587 nuclear transcription factor Y subunit B-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330587, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330587
    Gene description
    nuclear transcription factor Y subunit B-1-like
    Locus tag
    OSNPB_020725900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NF-Y4; NFYB1; nf-yb1; OsNF-YB-1; B1121A12.5; OJ1124_G07.28
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    Genomic context

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    See LOC4330587 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30683208..30684216, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30191484..30192513, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene tRNA (guanine(9)-N1)-methyltransferase Neighboring gene nuclear transcription factor Y subunit B-3 Neighboring gene fasciclin-like arabinogalactan protein 1 Neighboring gene dof zinc finger protein 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. aleurone layer specific, regulates grain filling and endosperm development by interacting with an ERF transcription factor
      Title: Rice aleurone layer specific OsNF-YB1 regulates grain filling and endosperm development by interacting with an ERF transcription factor.
    2. the aleurone-specific NF-YB1 plays an important role in regulating rice grain filling through activating the expression of SUT1, SUT3 and SUT4.
      Title: NF-YB1-regulated expression of sucrose transporters in aleurone facilitates sugar loading to rice endosperm.
    3. Results suggested that the endosperm-specific gene OsNF-YB1/OsHAP3K (AJ300218) might be a cell cycle regulator and played a role in maintaining the endosperm cell proliferation.
      Title: OsNF-YB1, a rice endosperm-specific gene, is essential for cell proliferation in endosperm development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit B-1
    Names
    CCAAT-binding transcription factor subunit NF-YB1
    LOC_Os02g49410
    NF-Y transcription factor 4
    putative NF-YB1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402119.1 → NP_001389048.1  nuclear transcription factor Y subunit B-1

      Status: VALIDATED

      Source sequence(s)
      CI685906, EU847013
      UniProtKB/Swiss-Prot
      Q6Z348, Q94IM0
      UniProtKB/TrEMBL
      A0A0U1U1Z6, A0A8J8Y1H9, A3AAY0, Q0DXY7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30683208..30684216 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z348.2 GenPept UniProtKB/Swiss-Prot:Q6Z348

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials