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    LOC4346973 probable transcription factor RL9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346973, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4346973
    Gene description
    probable transcription factor RL9
    Locus tag
    OSNPB_090395300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RL9; SLL1
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    Genomic context

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    See LOC4346973 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (18127925..18134581)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13758705..13765692)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene annexin D5 Neighboring gene uncharacterized LOC107275912 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 28 Neighboring gene protein FAR1-RELATED SEQUENCE 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice. Ren D, et al. Plant J, 2019 Nov. PMID 31357245
    2. ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice. Yan S, et al. Plant Mol Biol, 2008 Oct. PMID 18594992
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AH2, LOC_Os09g23200, plays an important role in the determination of hull epidermis development, palea identity, and grain size.
      Title: AH2 encodes a MYB domain protein that determines hull fate and affects grain yield and quality in rice.
    2. RL9 protein is localized in the nucleus, suggesting that RL9 acts as a putative transcription factor[ROLLED LEAF 9]
      Title: ROLLED LEAF 9, encoding a GARP protein, regulates the leaf abaxial cell fate in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable transcription factor RL9
    Names
    B1040D06.24
    LOC_Os09g23200
    Protein ROLLED LEAF 9
    Protein SHALLOT-LIKE 1
    rolled leaf 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422757.1 → NP_001409686.1  probable transcription factor RL9

      Status: VALIDATED

      Source sequence(s)
      AP014965, AU172423, AU172424, FJ268748

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      18127925..18134581
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0J235.2 GenPept UniProtKB/Swiss-Prot:Q0J235

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials