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    LOC4336865 transcription factor EAT1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336865, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336865
    Gene description
    transcription factor EAT1-like
    Locus tag
    OSNPB_040599300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DTD; EAT1; BHLH141; OsJ_16023; OsbHLH141
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    Genomic context

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    See LOC4336865 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30741552..30745083, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30235323..30239346, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g51745 Neighboring gene classical arabinogalactan protein 9-like Neighboring gene altered inheritance rate of mitochondria protein 25 Neighboring gene uncharacterized LOC9266263

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Secretory lipid transfer protein OsLTPL94 acts as a target of EAT1 and is required for rice pollen wall development. Tao Y, et al. Plant J, 2021 Oct. PMID 34314535
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Secretory lipid transfer protein OsLTPL94 acts as a target of EAT1 and is required for rice pollen wall development.
      Title: Secretory lipid transfer protein OsLTPL94 acts as a target of EAT1 and is required for rice pollen wall development.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anther wall tapetum development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor EAT1
    Names
    Basic helix-loop-helix protein 141
    LOC_Os04g51070
    OSJNBa0083N12.3
    OSJNba0093F12.24
    Os04g0599300
    Protein DELAYED TAPETUM DEGENERATION
    Protein ETERNAL TAPETUM 1
    Transcription factor EAT1
    transcription factor bHLH91

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419835.1 → NP_001406764.1  transcription factor EAT1

      Status: VALIDATED

      Source sequence(s)
      AK119509, AP014960, CI502041
      UniProtKB/Swiss-Prot
      Q7FAG1, Q7X8R0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30741552..30745083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779153.3 → XP_015634639.1  transcription factor EAT1 isoform X1

      UniProtKB/Swiss-Prot
      Q7FAG1, Q7X8R0
      UniProtKB/TrEMBL
      B8ATL6
      Conserved Domains (1) summary
      cd18918
      Location:266 → 335
      bHLH_AtMYC1_like; basic Helix-Loop-Helix (bHLH) domain found in Arabidopsis thaliana MYC1 and similar proteins

    2. XM_015779154.3 → XP_015634640.1  transcription factor EAT1 isoform X1

      UniProtKB/Swiss-Prot
      Q7FAG1, Q7X8R0
      UniProtKB/TrEMBL
      B8ATL6
      Conserved Domains (1) summary
      cd18918
      Location:266 → 335
      bHLH_AtMYC1_like; basic Helix-Loop-Helix (bHLH) domain found in Arabidopsis thaliana MYC1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X8R0.2 GenPept UniProtKB/Swiss-Prot:Q7X8R0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials