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    HSFA2D Heat stress transcription factor A-2d [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331707, updated on 17-Jul-2024

    Summary

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    Gene symbol
    HSFA2D
    Gene description
    Heat stress transcription factor A-2d
    Locus tag
    OSNPB_030161800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ARD; ARD2; HSF7; HSF08; SIP2A; rHsf7; ARD' 2; Ni-ARD 2; OsHsf-08; OsJ_09506; OsJ_009160; OJ1607A12.12; OJ1607A12.13
    Expression
    Ubiquitous expression in roots after flowering (RPKM 68.5), leaves after flowering (RPKM 56.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3351794..3354045)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3338232..3344523)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 5 Neighboring gene 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 Neighboring gene uncharacterized LOC107280444 Neighboring gene indole-3-pyruvate monooxygenase YUCCA8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice. Lin T, et al. Gene, 2005 Oct 24. PMID 16169685
    2. OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor. Liu JG, et al. BMB Rep, 2009 Jan 31. PMID 19192388
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
    Names
    ARD 2
    Fe-ARD 2
    Heat stress transcription factor 7
    Heat stress transcription factor 8
    LOC_Os03g06620
    LOC_Os03g06630
    Submergence-induced protein 2A
    acireductone dioxygenase (Fe(2+)-requiring) 2
    acireductone dioxygenase (Ni(2+)-requiring) 2
    NP_001388980.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402051.1 → NP_001388980.1  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

      Status: VALIDATED

      Source sequence(s)
      AY344489, CB660873, CB678246
      UniProtKB/TrEMBL
      A2XCT9

    RNA

    1. NR_174989.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CB660873, CB678246

    2. NR_174990.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AY344489, CB660873, CB678246

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3351794..3354045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10RE5.1 GenPept UniProtKB/Swiss-Prot:Q10RE5
    Q8H7Y6.2 GenPept UniProtKB/Swiss-Prot:Q8H7Y6

    Gene LinkOut

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