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    LOC4325828 NAC domain-containing protein 48-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325828, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4325828
    Gene description
    NAC domain-containing protein 48-like
    Locus tag
    OSNPB_010946200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 12.2), roots after flowering (RPKM 9.6) and 5 other tissues See more
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    Genomic context

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    See LOC4325828 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41584345..41595322)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein Musashi homolog 2 Neighboring gene protein JINGUBANG Neighboring gene lecithin-cholesterol acyltransferase-like 1 Neighboring gene lecithin-cholesterol acyltransferase-like 1 Neighboring gene glucan endo-1,3-beta-glucosidase GV Neighboring gene glucan endo-1,3-beta-glucosidase GV Neighboring gene glucan endo-1,3-beta-glucosidase GV

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NAC domain-containing protein 48-like
    Names
    Os01g0946200
    P0614D08.37
    P0660F12.31

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      41584345..41595322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786442.2 → XP_015641928.1  NAC domain-containing protein 48-like isoform X2

      UniProtKB/TrEMBL
      A0A9K3Y7C8, A0AA97PZ21, A2WYZ6, Q0JG32, Q7F119, Q94CP9
      Conserved Domains (1) summary
      pfam02365
      Location:17 → 148
      NAM; No apical meristem (NAM) protein

    2. XM_015786435.2 → XP_015641921.1  NAC domain-containing protein 48-like isoform X1

      UniProtKB/TrEMBL
      A0A9K3Y7C8, A0AA97PZ21, A2WYZ6, Q0JG32, Q7F119, Q94CP9
      Conserved Domains (1) summary
      pfam02365
      Location:17 → 148
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

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