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    LOC4349351 transcription factor UNE10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349351, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4349351
    Gene description
    transcription factor UNE10
    Locus tag
    OSNPB_100556200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349351 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22553960..22560638, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21861491..21867759, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene expansin-B3-like Neighboring gene expansin-B4-like Neighboring gene uncharacterized LOC107278522 Neighboring gene uncharacterized LOC107279207

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis. Li X, et al. Plant Physiol, 2006 Aug. PMID 16896230, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor UNE10
    Names
    Os10g0556200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22553960..22560638 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757230.3 → XP_015612716.1  transcription factor UNE10 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XX67, B8BI66
      Conserved Domains (1) summary
      cd11445
      Location:275 → 330
      bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

    2. XM_015757232.3 → XP_015612718.1  transcription factor UNE10 isoform X2

      Conserved Domains (1) summary
      smart00353
      Location:246 → 290
      HLH; helix loop helix domain

    3. XM_015757231.3 → XP_015612717.1  transcription factor UNE10 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XX67, B8BI66
      Conserved Domains (1) summary
      cd11445
      Location:275 → 330
      bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

    4. XM_066304778.1 → XP_066160875.1  transcription factor UNE10 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XX67, B8BI66
    Nucleotide Protein
    Heading Accession and Version

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