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    LOC9270361 auxin response factor 16-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270361, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC9270361
    Gene description
    auxin response factor 16-like
    Locus tag
    OSNPB_060196700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ARF16; OsJ_019622
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    Genomic context

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    See LOC9270361 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (5091193..5097821)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (4925628..4932663)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266717 Neighboring gene 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic Neighboring gene 20 kDa chaperonin, chloroplastic Neighboring gene ethylene-responsive transcription factor ERF039

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 16
    Names
    LOC_Os06g09660

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424866.1 → NP_001411795.1  auxin response factor 16

      Status: VALIDATED

      Source sequence(s)
      AK103327, AP014962, CI363717
      UniProtKB/Swiss-Prot
      A0A0N7KLP8, A3B9A0, Q0DDV5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      5091193..5097821
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787535.3 → XP_015643021.1  auxin response factor 16 isoform X1

      UniProtKB/Swiss-Prot
      A2YAA5
      Conserved Domains (3) summary
      pfam02309
      Location:856 → 924
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:31 → 133
      B3; B3 DNA binding domain
      pfam06507
      Location:163 → 239
      Auxin_resp; Auxin response factor

    2. XM_015787536.3 → XP_015643022.1  auxin response factor 16 isoform X2

      UniProtKB/Swiss-Prot
      A2YAA5
      Conserved Domains (3) summary
      pfam02309
      Location:793 → 861
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:3 → 70
      B3; B3 DNA binding domain
      pfam06507
      Location:100 → 176
      Auxin_resp; Auxin response factor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A3B9A0.1 GenPept UniProtKB/Swiss-Prot:A3B9A0

    Gene LinkOut

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