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    LOC4331765 cyclic dof factor 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331765, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331765
    Gene description
    cyclic dof factor 1
    Locus tag
    OSNPB_030169600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots after flowering (RPKM 117.0), leaves after flowering (RPKM 87.5) and 3 other tissues See more
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    Genomic context

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    See LOC4331765 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3738784..3741697)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g56310 Neighboring gene 50S ribosomal protein L18 Neighboring gene probable glucomannan 4-beta-mannosyltransferase 4 Neighboring gene uncharacterized LOC4331767 Neighboring gene uncharacterized LOC4331768

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclic dof factor 1
    Names
    Dof-type zinc finger protein 06
    Os03g0169600
    putative H-protein promoter binding factor-2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      3738784..3741697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776308.2 → XP_015631794.1  cyclic dof factor 1

      UniProtKB/TrEMBL
      A0A0P0VTI9, A3AEJ8, Q8S7W1
      Conserved Domains (1) summary
      pfam02701
      Location:105 → 160
      zf-Dof; Dof domain, zinc finger
    Nucleotide Protein
    Heading Accession and Version

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