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    LOC4352761 transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352761, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4352761
    Gene description
    transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
    Locus tag
    OSNPB_120610200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4352761 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (26484370..26488609)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25768781..25773066)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g48880 Neighboring gene uncharacterized LOC9271612 Neighboring gene uncharacterized LOC9269655 Neighboring gene uncharacterized LOC9272238 Neighboring gene uncharacterized LOC4352762

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
    Names
    Os12g0610200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      26484370..26488609
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762592.2 → XP_015618078.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0YCE9, A2ZML0, Q0IM00
      Conserved Domains (1) summary
      cd11445
      Location:269 → 332
      bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

    2. XM_015762593.2 → XP_015618079.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0YCE9, A2ZML0, Q0IM00
      Conserved Domains (1) summary
      cd11445
      Location:269 → 332
      bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

    3. XM_015762589.3 → XP_015618075.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1

      UniProtKB/TrEMBL
      Q2QMB8
      Conserved Domains (1) summary
      cd11445
      Location:269 → 332
      bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

    4. XM_015762588.3 → XP_015618074.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1

      UniProtKB/TrEMBL
      Q2QMB8
      Conserved Domains (1) summary
      cd11445
      Location:269 → 332
      bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

    5. XM_066306529.1 → XP_066162626.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3

    6. XM_066306528.1 → XP_066162625.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2

      UniProtKB/TrEMBL
      A0A0P0YCE9, A2ZML0, Q0IM00

    7. XM_015762590.3 → XP_015618076.1  transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1

      UniProtKB/TrEMBL
      Q2QMB8
      Conserved Domains (1) summary
      cd11445
      Location:269 → 332
      bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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