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CDH23-AS1 CDH23 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102723377, updated on 17-Sep-2024

Summary

Official Symbol
CDH23-AS1provided by HGNC
Official Full Name
CDH23 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:31433
See related
Ensembl:ENSG00000223817 AllianceGenome:HGNC:31433
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C10orf106; bA327E2.3; NCRNA00223
Expression
Low expression observed in reference dataset See more
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Genomic context

See CDH23-AS1 in Genome Data Viewer
Location:
10q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (71508153..71511920, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (72378015..72381782, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (73267910..73271677, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378353 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:73103993-73104698 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:73105405-73106110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73110710-73111210 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73111211-73111711 Neighboring gene solute carrier family 29 member 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2462 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3513 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73136384-73136944 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3514 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2463 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73156969-73157480 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:73202099-73202263 Neighboring gene cadherin related 23 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:73222965-73223156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73225529-73226250 Neighboring gene uncharacterized LOC105378356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73246156-73246656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73246657-73247157 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73254765-73255264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73261097-73261617 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73277285-73277785 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73287079-73287589 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:73295035-73295856 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73300575-73301272 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:73301937-73302516 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73303768-73304277 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:73307302-73307496 Neighboring gene uncharacterized LOC105378355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73321825-73322348 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73322349-73322872 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:73327348-73328169 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:73331571-73332072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73372049-73372563 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:73381965-73382568 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73390204-73391034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73392929-73393464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73393465-73394000 Neighboring gene Sharpr-MPRA regulatory region 11817 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:73398641-73399578 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:73402475-73403119 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3516 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:73417087-73417810 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:73417811-73418534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73447088-73447602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3517 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73460453-73461367 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73461368-73462281 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:73476810-73477007 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:73478924-73479672 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:73485282-73486481 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:73489247-73489438 Neighboring gene chromosome 10 open reading frame 105

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120672.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359183
    Related
    ENST00000428918.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    71508153..71511920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    72378015..72381782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)