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    LOC11409715 zinc finger protein 4 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11409715, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11409715
    Gene description
    zinc finger protein 4
    Locus tag
    MtrunA17_Chr3g0110091
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11409715 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (32841354..32844042, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (29334732..29337426, complement)

    Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120579600 Neighboring gene importin-5 Neighboring gene U-box domain-containing protein 21 Neighboring gene agamous-like MADS-box protein AGL80

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of abscisic acid-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein 4
    Names
    putative transcription factor C2H2 family
    zinc finger-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      32841354..32844042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024778195.2 → XP_024633963.1  zinc finger protein 4

      UniProtKB/TrEMBL
      G7J8Q3
      Conserved Domains (1) summary
      cd20908
      Location:88 → 115
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    2. XM_003600631.4 → XP_003600679.1  zinc finger protein 4

      See identical proteins and their annotated locations for XP_003600679.1

      UniProtKB/TrEMBL
      G7J8Q3
      Conserved Domains (1) summary
      cd20908
      Location:88 → 115
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    3. XM_039831385.1 → XP_039687319.1  zinc finger protein 4

      UniProtKB/TrEMBL
      G7J8Q3
      Conserved Domains (1) summary
      cd20908
      Location:88 → 115
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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