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    LOC11419004 G-box-binding factor 1 [ Medicago truncatula (barrel medic) ]

    Gene ID: 11419004, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC11419004
    Gene description
    G-box-binding factor 1
    Locus tag
    MtrunA17_Chr8g0373571
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC11419004 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 8 NC_053049.1 (35678480..35684013, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 8 NC_016414.2 (33206127..33211700, complement)

    Chromosome 8 - NC_053049.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein GAI-ASSOCIATED FACTOR 1 Neighboring gene scarecrow-like protein 15 Neighboring gene uncharacterized LOC112417421 Neighboring gene uncharacterized LOC120577305

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    G-box-binding factor 1
    Names
    bZIP transcription factor family protein
    putative transcription factor bZIP family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053049.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      35678480..35684013 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039829449.1 → XP_039685383.1  G-box-binding factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A072U3Q1, G7LEV3
      Conserved Domains (4) summary
      smart00338
      Location:257 → 320
      BRLZ; basic region leucin zipper
      cd14702
      Location:261 → 311
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:125 → 229
      MFMR_assoc; Disordered region downstream of MFMR

    2. XM_003629432.4 → XP_003629480.1  G-box-binding factor 1 isoform X1

      See identical proteins and their annotated locations for XP_003629480.1

      UniProtKB/TrEMBL
      A0A072U3Q1, G7LEV4
      Conserved Domains (4) summary
      smart00338
      Location:259 → 322
      BRLZ; basic region leucin zipper
      cd14702
      Location:263 → 313
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 96
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:127 → 229
      MFMR_assoc; Disordered region downstream of MFMR
    Nucleotide Protein
    Heading Accession and Version

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