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    LOC25484913 protein indeterminate-domain 4, chloroplastic [ Medicago truncatula (barrel medic) ]

    Gene ID: 25484913, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25484913
    Gene description
    protein indeterminate-domain 4, chloroplastic
    Locus tag
    MtrunA17_Chr1g0199101
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25484913 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 1 NC_053042.1 (45933099..45937289)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 1 NC_016407.2 (42285743..42289954)

    Chromosome 1 - NC_053042.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase CYP21-4 Neighboring gene transcription factor bHLH111 Neighboring gene extensin-1 Neighboring gene probable cysteine protease RD19D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein indeterminate-domain 4, chloroplastic; protein indeterminate-domain 5, chloroplastic
    Names
    putative transcription factor C2H2 family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053042.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      45933099..45937289
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024785171.2 → XP_024640939.1  protein indeterminate-domain 4, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A072VNU9, A0A072VPA1
      Conserved Domains (1) summary
      sd00017
      Location:78 → 98
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_013613979.3 → XP_013469433.1  protein indeterminate-domain 4, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A072VNU9, A0A072VPA1
      Conserved Domains (1) summary
      sd00017
      Location:78 → 98
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_024785175.2 → XP_024640943.1  protein indeterminate-domain 5, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A072VNU9
      Conserved Domains (1) summary
      sd00017
      Location:8 → 28
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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