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    LOC25494693 transcription factor bHLH49 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25494693, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25494693
    Gene description
    transcription factor bHLH49
    Locus tag
    MtrunA17_Chr5g0421111
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25494693 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 5 NC_053046.1 (21761581..21765459, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 5 NC_016411.2 (21356243..21360218, complement)

    Chromosome 5 - NC_053046.1Genomic Context describing neighboring genes Neighboring gene protein SRG1 Neighboring gene protein SRG1 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC112422089

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Boscari A, et al. Plant Physiol, 2013 Jan. PMID 23136381, Free PMC Article
    2. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH49
    Names
    BHLH transcription factor
    putative transcription factor bHLH family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053046.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      21761581..21765459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024784218.2 → XP_024639986.1  transcription factor bHLH49

      UniProtKB/TrEMBL
      A0A072UE55
      Conserved Domains (1) summary
      cd18919
      Location:361 → 446
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    2. XM_024784217.2 → XP_024639985.1  transcription factor bHLH49

      UniProtKB/TrEMBL
      A0A072UE55
      Conserved Domains (1) summary
      cd18919
      Location:361 → 446
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    3. XM_024784216.2 → XP_024639984.1  transcription factor bHLH49

      UniProtKB/TrEMBL
      A0A072UE55
      Conserved Domains (1) summary
      cd18919
      Location:361 → 446
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    4. XM_024784215.2 → XP_024639983.1  transcription factor bHLH49

      UniProtKB/TrEMBL
      A0A072UE55
      Conserved Domains (1) summary
      cd18919
      Location:361 → 446
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    5. XM_039834305.1 → XP_039690239.1  transcription factor bHLH49

      UniProtKB/TrEMBL
      A0A072UE55
      Conserved Domains (1) summary
      cd18919
      Location:361 → 446
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

    6. XM_024784214.2 → XP_024639982.1  transcription factor bHLH49

      UniProtKB/TrEMBL
      A0A072UE55
      Conserved Domains (1) summary
      cd18919
      Location:361 → 446
      bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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