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    LOC25490658 agamous-like MADS-box protein MADS1 [ Medicago truncatula (barrel medic) ]

    Gene ID: 25490658, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC25490658
    Gene description
    agamous-like MADS-box protein MADS1
    Locus tag
    MtrunA17_Chr3g0097101
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Medicago truncatula
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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    Genomic context

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    See LOC25490658 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current MtrunA17r5.0-ANR (GCF_003473485.1) 3 NC_053044.1 (21683706..21691915, complement)
    101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 3 NC_016409.2 (19135880..19142922, complement)

    Chromosome 3 - NC_053044.1Genomic Context describing neighboring genes Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like Neighboring gene probable galacturonosyltransferase 15 Neighboring gene uncharacterized LOC25490660 Neighboring gene HVA22-like protein f

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A change in SHATTERPROOF protein lies at the origin of a fruit morphological novelty and a new strategy for seed dispersal in medicago genus. Fourquin C, et al. Plant Physiol, 2013 Jun. PMID 23640757, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    agamous-like MADS-box protein MADS1
    Names
    MADS-box transcription factor
    SHATTERPROOF
    agamous-like MADS-box protein AGL1
    putative transcription factor MADS-MIKC family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MtrunA17r5.0-ANR Primary Assembly

    Genomic

    1. NC_053044.1 Reference MtrunA17r5.0-ANR Primary Assembly

      Range
      21683706..21691915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039831253.1 → XP_039687187.1  agamous-like MADS-box protein MADS1 isoform X3

      Conserved Domains (1) summary
      cd00265
      Location:17 → 91
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...

    2. XM_039831251.1 → XP_039687185.1  agamous-like MADS-box protein MADS1 isoform X1

      UniProtKB/TrEMBL
      K4JRB1
      Conserved Domains (2) summary
      cd00265
      Location:17 → 91
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:103 → 187
      K-box; K-box region

    3. XM_039831252.1 → XP_039687186.1  agamous-like MADS-box protein MADS1 isoform X1

      UniProtKB/TrEMBL
      K4JRB1
      Conserved Domains (2) summary
      cd00265
      Location:17 → 91
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:103 → 187
      K-box; K-box region

    4. XM_024780259.2 → XP_024636027.1  agamous-like MADS-box protein MADS1 isoform X2

      UniProtKB/TrEMBL
      K4JRB1
      Conserved Domains (2) summary
      cd00265
      Location:17 → 91
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:103 → 187
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version

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