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    LOC103427885 transcription factor TCP2-like [ Malus domestica (apple) ]

    Gene ID: 103427885, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC103427885
    Gene description
    transcription factor TCP2-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
    Also known as
    MdTCP2A
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    Genomic context

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    See LOC103427885 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 10 NC_041798.1 (35411372..35417948)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 5 Unlocalized Scaffold (alt_haplotype3.MalDomGD1.0) NW_007545970.1 (3936929..3943076)

    Chromosome 10 - NC_041798.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103419720 Neighboring gene endoplasmic reticulum oxidoreductin-1-like Neighboring gene F-box protein At5g46170-like Neighboring gene ornithine aminotransferase, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Apple FLOWERING LOCUS T proteins interact with transcription factors implicated in cell growth and organ development. Mimida N, et al. Tree Physiol, 2011 May. PMID 21571725
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of secondary shoot formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TCP2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328887.1 → NP_001315816.1  transcription factor TCP2-like

      Status: PROVISIONAL

      Source sequence(s)
      AB531019
      UniProtKB/TrEMBL
      D5MRQ0
      Conserved Domains (1) summary
      cl23822
      Location:1 → 480
      TCP; TCP family transcription factor

    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041798.1 Reference ASM211411v1 Primary Assembly

      Range
      35411372..35417948
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008373401.3 → XP_008371623.2  transcription factor TCP2-like isoform X1

      UniProtKB/TrEMBL
      D5MRQ0
      Conserved Domains (1) summary
      cl23822
      Location:1 → 480
      TCP; TCP family transcription factor

    2. XM_008373399.3 → XP_008371621.2  transcription factor TCP2-like isoform X1

      UniProtKB/TrEMBL
      D5MRQ0
      Conserved Domains (1) summary
      cl23822
      Location:1 → 480
      TCP; TCP family transcription factor

    3. XM_008373402.3 → XP_008371624.2  transcription factor TCP2-like isoform X1

      UniProtKB/TrEMBL
      D5MRQ0
      Conserved Domains (1) summary
      cl23822
      Location:1 → 480
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version

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