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    LOC103436434 transcription factor MYB44-like [ Malus domestica (apple) ]

    Gene ID: 103436434, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC103436434
    Gene description
    transcription factor MYB44-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
    Also known as
    MYB3
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    Genomic context

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    See LOC103436434 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 5 NC_041793.1 (19071008..19072166)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 5 NC_024243.1 (26744788..26746036, complement)

    Chromosome 5 - NC_041793.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B11 Neighboring gene PRKR-interacting protein 1-like Neighboring gene protein unc-50 homolog Neighboring gene cinnamyl alcohol dehydrogenase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor MYB44-like
    Names
    MYB domain class transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328942.1 → NP_001315871.1  transcription factor MYB44-like

      Status: PROVISIONAL

      Source sequence(s)
      HM122621
      UniProtKB/TrEMBL
      A0A498JY66, D9ZJ57
      Conserved Domains (2) summary
      smart00717
      Location:10 → 58
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      pfam00249
      Location:10 → 56
      Myb_DNA-binding; Myb-like DNA-binding domain

    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041793.1 Reference ASM211411v1 Primary Assembly

      Range
      19071008..19072166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases