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    LOC103413247 transcription factor ILR3-like [ Malus domestica (apple) ]

    Gene ID: 103413247, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC103413247
    Gene description
    transcription factor ILR3-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
    Also known as
    BHLH16
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    Genomic context

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    See LOC103413247 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 11 NC_041799.1 (33095828..33098656, complement)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 11 Unlocalized Scaffold (alt_haplotype1.MalDomGD1.0) NW_007545313.1 (740714..741421)

    Chromosome 11 - NC_041799.1Genomic Context describing neighboring genes Neighboring gene probable galacturonosyltransferase 12 Neighboring gene uncharacterized LOC103448536 Neighboring gene photosynthetic NDH subunit of lumenal location 3, chloroplastic Neighboring gene kinesin-like protein KIN-14N

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular iron ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor ILR3-like
    Names
    BHLH domain class transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328794.1 → NP_001315723.1  transcription factor ILR3-like

      Status: PROVISIONAL

      Source sequence(s)
      HM122454
      UniProtKB/TrEMBL
      A0A498IIF7, D9ZIP0
      Conserved Domains (2) summary
      pfam00010
      Location:71 → 120
      HLH; Helix-loop-helix DNA-binding domain
      pfam06005
      Location:118 → 167
      DUF904; Protein of unknown function (DUF904)

    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041799.1 Reference ASM211411v1 Primary Assembly

      Range
      33095828..33098656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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