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    LOC103449153 ethylene-responsive transcription factor ERF071-like [ Malus domestica (apple) ]

    Gene ID: 103449153, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC103449153
    Gene description
    ethylene-responsive transcription factor ERF071-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
    Also known as
    AP2D24
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    Genomic context

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    See LOC103449153 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 11 NC_041799.1 (42037089..42038437, complement)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 11 NC_024249.1 (34407068..34408416)

    Chromosome 11 - NC_041799.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L19-1 Neighboring gene dirigent protein 25 Neighboring gene proline-rich protein 3-like Neighboring gene putative GTP diphosphokinase RSH1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening. Tacken E, et al. Plant Physiol, 2010 May. PMID 20237022, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor ERF071-like
    Names
    AP2 domain class transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320016.1 → NP_001306945.1  ethylene-responsive transcription factor ERF071-like

      Status: PROVISIONAL

      Source sequence(s)
      GU732448
      UniProtKB/TrEMBL
      D5L108
      Conserved Domains (1) summary
      smart00380
      Location:78 → 137
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041799.1 Reference ASM211411v1 Primary Assembly

      Range
      42037089..42038437 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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