U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC103436897 transcription factor MYC2 [ Malus domestica (apple) ]

    Gene ID: 103436897, updated on 22-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC103436897
    Gene description
    transcription factor MYC2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
    Also known as
    BHLH2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC103436897 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 6 NC_041794.1 (4265909..4268454, complement)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 6 NC_024244.1 (4122647..4125286, complement)

    Chromosome 6 - NC_041794.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103428172 Neighboring gene uncharacterized LOC103428195 Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD9 Neighboring gene ubiquitin carboxyl-terminal hydrolase 21

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The molecular cloning and functional characterization of MdMYC2, a bHLH transcription factor in apple. An JP, et al. Plant Physiol Biochem, 2016 Nov. PMID 27404131

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MYC2 is involved in anthocyanin biosynthesis and in a hypersensitization response to methyl jasmonate.
      Title: The molecular cloning and functional characterization of MdMYC2, a bHLH transcription factor in apple.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor MYC2
    Names
    BHLH domain class transcription factor

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328944.1 → NP_001315873.1  transcription factor MYC2

      Status: PROVISIONAL

      Source sequence(s)
      HM122456
      UniProtKB/TrEMBL
      D9ZIP2
      Conserved Domains (2) summary
      cd00083
      Location:511 → 562
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      pfam14215
      Location:82 → 264
      bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal

    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041794.1 Reference ASM211411v1 Primary Assembly

      Range
      4265909..4268454 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases