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    YABBY2 putative axial regulator YABBY 2 [ Malus domestica (apple) ]

    Gene ID: 103444926, updated on 22-Oct-2023

    Summary

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    Gene symbol
    YABBY2
    Gene description
    putative axial regulator YABBY 2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Malus domestica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Malus
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    Genomic context

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    See YABBY2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current ASM211411v1 (GCF_002114115.1) 3 NC_041791.1 (18977477..18984678, complement)
    101 previous assembly MalDomGD1.0 (GCF_000148765.1) 10 NC_024248.1 (7651344..7658572)

    Chromosome 3 - NC_041791.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 8 Neighboring gene uncharacterized LOC114824185 Neighboring gene uncharacterized LOC103412007 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative axial regulator YABBY 2
    Names
    YABBY domain class transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001294060.1 → NP_001280989.1  putative axial regulator YABBY 2

      See identical proteins and their annotated locations for NP_001280989.1

      Status: PROVISIONAL

      Source sequence(s)
      HM122729
      UniProtKB/TrEMBL
      A0A498KH72, D9ZJG5
      Conserved Domains (1) summary
      pfam04690
      Location:6 → 168
      YABBY; YABBY protein

    RefSeqs of Annotated Genomes: Malus domestica Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM211411v1 Primary Assembly

    Genomic

    1. NC_041791.1 Reference ASM211411v1 Primary Assembly

      Range
      18977477..18984678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008383898.3 → XP_008382120.2  putative axial regulator YABBY 2 isoform X3

      UniProtKB/TrEMBL
      A0A498KH72
      Conserved Domains (1) summary
      pfam04690
      Location:6 → 172
      YABBY; YABBY protein

    2. XM_008383899.3 → XP_008382121.3  putative axial regulator YABBY 2 isoform X2

      Conserved Domains (1) summary
      pfam04690
      Location:48 → 193
      YABBY; YABBY protein

    3. XM_008383897.3 → XP_008382119.3  putative axial regulator YABBY 2 isoform X1

      Conserved Domains (1) summary
      pfam04690
      Location:48 → 195
      YABBY; YABBY protein
    Nucleotide Protein
    Heading Accession and Version

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