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    LOC101254088 LOB domain-containing protein 42 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101254088, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101254088
    Gene description
    LOB domain-containing protein 42
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101254088 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 5 NC_090804.1 (3728412..3730078, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 5 NC_015442.3 (3454384..3455978, complement)

    Chromosome 5 - NC_090804.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101253483 Neighboring gene zinc finger protein CONSTANS-LIKE 16-like Neighboring gene uncharacterized LOC138348489 Neighboring gene uncharacterized LOC101254384

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOB domain-containing protein 42

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090804.1 Reference SLM_r2.1 Primary Assembly

      Range
      3728412..3730078 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004238879.5 → XP_004238927.1  LOB domain-containing protein 42

      UniProtKB/TrEMBL
      A0A3Q7GEH2
      Conserved Domains (1) summary
      pfam03195
      Location:5 → 104
      DUF260; Protein of unknown function DUF260
    Nucleotide Protein
    Heading Accession and Version

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