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    ARF6A auxin response factor 6a [ Solanum lycopersicum (tomato) ]

    Gene ID: 100316890, updated on 1-Nov-2024

    Summary

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    Gene symbol
    ARF6A
    Gene description
    auxin response factor 6a
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    Sl-ARF6A
    Annotation information
    Annotation category: suggests misassembly
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    Genomic context

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    See ARF6A in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (1263011..1270962)
    103 previous assembly SL3.0 (GCF_000188115.4) Unplaced Scaffold NW_020444325.1 (107..2614)

    Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene acylsugar acyltransferase 1 Neighboring gene auxin response factor 6a Neighboring gene protein DETOXIFICATION 41 Neighboring gene polyamine oxidase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato. Liu N, et al. J Exp Bot, 2014 Jun. PMID 24723401, Free PMC Article
    2. Characterization of the tomato ARF gene family uncovers a multi-levels post-transcriptional regulation including alternative splicing. Zouine M, et al. PLoS One, 2014. PMID 24427281, Free PMC Article
    3. Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum. Wu J, et al. Plant Cell Rep, 2011 Nov. PMID 21735233
    4. The Interaction between DELLA and ARF/IAA Mediates Crosstalk between Gibberellin and Auxin Signaling to Control Fruit Initiation in Tomato. Hu J, et al. Plant Cell, 2018 Aug. PMID 30008445, Free PMC Article
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hormone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin response factor 6a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001247734.1 → NP_001234663.1  auxin response factor 6a

      See identical proteins and their annotated locations for NP_001234663.1

      Status: PROVISIONAL

      Source sequence(s)
      GQ360036
      UniProtKB/TrEMBL
      C7FFK5, E0AD21
      Conserved Domains (3) summary
      pfam02309
      Location:690 → 821
      AUX_IAA; AUX/IAA family
      pfam02362
      Location:130 → 232
      B3; B3 DNA binding domain
      pfam06507
      Location:262 → 339
      Auxin_resp; Auxin response factor

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

      Range
      1263011..1270962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_069291804.1 → XP_069147905.1  auxin response factor 6a isoform X2

    2. XM_069291803.1 → XP_069147904.1  auxin response factor 6a isoform X1

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases