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    THox2 homeobox 2 protein [ Solanum lycopersicum (tomato) ]

    Gene ID: 544030, updated on 9-Nov-2023

    Summary

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    Gene symbol
    THox2
    Gene description
    homeobox 2 protein
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See THox2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 8 NC_015445.3 (63583583..63588208)
    102 previous assembly SL2.50 (GCF_000188115.3) 8 NC_015445.2 (63462855..63467478)

    Chromosome 8 - NC_015445.3Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase MINDY-2 Neighboring gene U6 spliceosomal RNA Neighboring gene phospholipase PLDb1 Neighboring gene bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox 2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001311183.1 → NP_001298112.1  homeobox 2 protein

      Status: VALIDATED

      Source sequence(s)
      AK325838, DB708143
      UniProtKB/TrEMBL
      A0A3Q7IPR5, Q9ZRB8
      Conserved Domains (3) summary
      pfam03790
      Location:45 → 82
      KNOX1; KNOX1 domain
      pfam03791
      Location:108 → 156
      KNOX2; KNOX2 domain
      pfam05920
      Location:253 → 292
      Homeobox_KN; Homeobox KN domain

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015445.3 Reference SL3.0 Primary Assembly

      Range
      63583583..63588208
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases