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    LOC101258704 transcription factor bHLH121 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101258704, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101258704
    Gene description
    transcription factor bHLH121
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101258704 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (93602120..93606514, complement)
    103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (97414097..97418449, complement)

    Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101250258 Neighboring gene triosephosphate isomerase, chloroplastic Neighboring gene protein XAP5 CIRCADIAN TIMEKEEPER Neighboring gene translocon-associated protein subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular iron ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH121

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

      Range
      93602120..93606514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004230882.5 → XP_004230930.1  transcription factor bHLH121 isoform X2

      UniProtKB/TrEMBL
      K4B3X6
      Conserved Domains (2) summary
      smart00353
      Location:64 → 110
      HLH; helix loop helix domain
      pfam06005
      Location:98 → 154
      DUF904; Protein of unknown function (DUF904)

    2. XM_019211929.3 → XP_019067474.1  transcription factor bHLH121 isoform X1

      UniProtKB/TrEMBL
      A0A3Q7EUG3
    Nucleotide Protein
    Heading Accession and Version

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