U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC101259296 zinc finger transcription factor 57 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101259296, updated on 1-Nov-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101259296
    Gene description
    zinc finger transcription factor 57
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101259296 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 10 NC_090809.1 (17273498..17288426)
    103 previous assembly SL3.0 (GCF_000188115.4) 10 NC_015447.3 (18556782..18571611)

    Chromosome 10 - NC_090809.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138339024 Neighboring gene uncharacterized LOC138338730 Neighboring gene uncharacterized LOC101259297 Neighboring gene secreted RxLR effector protein 161-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger transcription factor 57
    Names
    zinc finger CCCH domain-containing protein 69-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320947.1 → NP_001307876.1  zinc finger transcription factor 57

      Status: VALIDATED

      Source sequence(s)
      AEKE03003146, AK319708
      UniProtKB/TrEMBL
      A0A3Q7IET7
      Conserved Domains (2) summary
      smart00356
      Location:5 → 26
      ZnF_C3H1; zinc finger
      cd00162
      Location:207 → 266
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090809.1 Reference SLM_r2.1 Primary Assembly

      Range
      17273498..17288426
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_069289676.1 → XP_069145777.1  zinc finger transcription factor 57 isoform X1

    2. XM_010328981.4 → XP_010327283.1  zinc finger transcription factor 57 isoform X1

      See identical proteins and their annotated locations for XP_010327283.1

      UniProtKB/TrEMBL
      A0A3Q7IET7
      Conserved Domains (2) summary
      smart00356
      Location:5 → 26
      ZnF_C3H1; zinc finger
      cd00162
      Location:207 → 266
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    3. XM_069289675.1 → XP_069145776.1  zinc finger transcription factor 57 isoform X1

    RNA

    1. XR_003248349.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases