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    LOC101260506 DNA polymerase epsilon subunit 3 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101260506, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101260506
    Gene description
    DNA polymerase epsilon subunit 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101260506 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 11 NC_015448.3 (53485566..53488748)
    102 previous assembly SL2.50 (GCF_000188115.3) 11 NC_015448.2 (53191125..53194304)

    Chromosome 11 - NC_015448.3Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML48 Neighboring gene pentatricopeptide repeat-containing protein Neighboring gene uncharacterized LOC104644772 Neighboring gene protein transport protein SEC24

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA damage response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heterochromatin formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in leading strand elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CHRAC IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of epsilon DNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA polymerase epsilon subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015448.3 Reference SL3.0 Primary Assembly

      Range
      53485566..53488748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004251012.4 → XP_004251060.1  DNA polymerase epsilon subunit 3

      UniProtKB/TrEMBL
      A0A3Q7IZT6
      Conserved Domains (1) summary
      cl23735
      Location:23 → 116
      H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
    Nucleotide Protein
    Heading Accession and Version

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