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    JAF13 bHLH-type transcription factor JAF13 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101256795, updated on 9-Nov-2023

    Summary

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    Gene symbol
    JAF13
    Gene description
    bHLH-type transcription factor JAF13
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    SlJAF13
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    Genomic context

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    See JAF13 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 8 NC_015445.3 (64341490..64346297)
    102 previous assembly SL2.50 (GCF_000188115.3) 8 NC_015445.2 (64220753..64225560)

    Chromosome 8 - NC_015445.3Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-14J Neighboring gene uncharacterized LOC101260255 Neighboring gene GMP synthase [glutamine-hydrolyzing] Neighboring gene TONNEAU1 recruiting motif 13/14/15/33b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of bHLH and MYB domain proteins: species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Quattrocchio F, et al. Plant J, 1998 Feb. PMID 9680994
    2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bHLH-type transcription factor JAF13
    Names
    transcription factor EGL1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347001.1 → NP_001333930.1  bHLH-type transcription factor JAF13

      Status: VALIDATED

      Source sequence(s)
      AEKE03003144, AK320756
      UniProtKB/TrEMBL
      K4CPB2

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015445.3 Reference SL3.0 Primary Assembly

      Range
      64341490..64346297
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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