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    LOC101245902 B3 domain-containing protein Os01g0234100 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101245902, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101245902
    Gene description
    B3 domain-containing protein Os01g0234100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101245902 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (68550660..68556307)
    103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (52868531..52873951)

    Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene cyclin-dependent kinase inhibitor 1 Neighboring gene uncharacterized membrane protein At3g27390 Neighboring gene uncharacterized LOC101245602 Neighboring gene uncharacterized LOC138342323

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    B3 domain-containing protein Os01g0234100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

      Range
      68550660..68556307
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004231991.5 → XP_004232039.1  B3 domain-containing protein Os01g0234100

      UniProtKB/TrEMBL
      A0A3Q7FY77
      Conserved Domains (1) summary
      cd10017
      Location:165 → 256
      B3_DNA; Plant-specific B3-DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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