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    LOC101247561 protein indeterminate-domain 12 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101247561, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101247561
    Gene description
    protein indeterminate-domain 12
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101247561 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 1 NC_090800.1 (85503074..85507598)
    103 previous assembly SL3.0 (GCF_000188115.4) 1 NC_015438.3 (89500775..89504957)

    Chromosome 1 - NC_090800.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit B-4-like Neighboring gene probable methyltransferase At1g29790 Neighboring gene acyl-CoA-binding domain-containing protein 4 Neighboring gene PWWP domain-containing protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein indeterminate-domain 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090800.1 Reference SLM_r2.1 Primary Assembly

      Range
      85503074..85507598
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004230169.5 → XP_004230217.1  protein indeterminate-domain 12

      UniProtKB/TrEMBL
      A0A3Q7EN51
      Conserved Domains (1) summary
      sd00017
      Location:72 → 92
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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