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    LOC101055567 calmodulin-binding transcription factor SR2 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101055567, updated on 1-Nov-2024

    Summary

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    Gene symbol
    LOC101055567
    Gene description
    calmodulin-binding transcription factor SR2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101055567 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (42239842..42264743)
    103 previous assembly SL3.0 (GCF_000188115.4) 12 NC_015449.3 (41362886..41419652)

    Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138340372 Neighboring gene uncharacterized LOC104645046 Neighboring gene uncharacterized LOC138340738 Neighboring gene uncharacterized mitochondrial protein AtMg00240-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a calcium/calmodulin-regulated SR/CAMTA gene family during tomato fruit development and ripening. Yang T, et al. BMC Plant Biol, 2012 Feb 13. PMID 22330838, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmodulin-binding transcription factor SR2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001279201.1 → NP_001266130.1  calmodulin-binding transcription factor SR2

      See identical proteins and their annotated locations for NP_001266130.1

      Status: PROVISIONAL

      Source sequence(s)
      JN566047
      UniProtKB/TrEMBL
      H8ZRY2
      Conserved Domains (6) summary
      COG0666
      Location:547 → 627
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:583 → 654
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01833
      Location:363 → 446
      TIG; IPT/TIG domain
      pfam03859
      Location:14 → 128
      CG-1; CG-1 domain
      pfam13637
      Location:596 → 654
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:595 → 632
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

      Range
      42239842..42264743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_069291809.1 → XP_069147910.1  calmodulin-binding transcription factor SR2 isoform X1

    2. XM_069291811.1 → XP_069147912.1  calmodulin-binding transcription factor SR2 isoform X2

    3. XM_069291813.1 → XP_069147914.1  calmodulin-binding transcription factor SR2 isoform X3

    4. XM_010315853.4 → XP_010314155.1  calmodulin-binding transcription factor SR2 isoform X1

      UniProtKB/TrEMBL
      K4DE13
      Conserved Domains (7) summary
      smart00015
      Location:840 → 860
      IQ; Calmodulin-binding motif
      COG0666
      Location:591 → 671
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:627 → 698
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam01833
      Location:407 → 490
      TIG; IPT/TIG domain
      pfam03859
      Location:14 → 128
      CG-1; CG-1 domain
      pfam13637
      Location:640 → 698
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:639 → 676
      ANK; ANK repeat [structural motif]

    5. XM_069291810.1 → XP_069147911.1  calmodulin-binding transcription factor SR2 isoform X2

    6. XM_069291812.1 → XP_069147913.1  calmodulin-binding transcription factor SR2 isoform X3

    RNA

    1. XR_738803.4 RNA Sequence

    2. XR_011213068.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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