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    LOC763209 protein FAM49B [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 763209, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC763209
    Gene description
    protein FAM49B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC763209 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145598.1 (18335100..18370845)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003584922.1 (5376..38378)

    NW_022145598.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115923320 Neighboring gene uncharacterized LOC105446986 Neighboring gene paraneoplastic antigen Ma3-like Neighboring gene uncharacterized LOC115923033

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of actin filament polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAM49B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145598.1 Reference Spur_5.0 Primary Assembly

      Range
      18335100..18370845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030983080.1 → XP_030838940.1  protein FAM49B

      UniProtKB/TrEMBL
      A0A7M7NN64
      Conserved Domains (1) summary
      pfam07159
      Location:19 → 320
      DUF1394; Protein of unknown function (DUF1394)

    2. XM_030983079.1 → XP_030838939.1  protein FAM49B

      UniProtKB/TrEMBL
      A0A7M7NN64
      Conserved Domains (1) summary
      pfam07159
      Location:19 → 320
      DUF1394; Protein of unknown function (DUF1394)
    Nucleotide Protein
    Heading Accession and Version

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