U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.
    • Unknown field was ignored: [has_clinical].

    LOC594819 TBC1 domain family member 5 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 594819, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC594819
    Gene description
    TBC1 domain family member 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC594819 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145612.1 (44114922..44139487)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003576966.1 (854098..882712, complement)

    NW_022145612.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105440448 Neighboring gene zinc finger E-box-binding homeobox 2-like Neighboring gene zinc finger E-box-binding homeobox 2 Neighboring gene uncharacterized protein C7orf31 Neighboring gene dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in activation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    TBC1 domain family member 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145612.1 Reference Spur_5.0 Primary Assembly

      Range
      44114922..44139487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011670580.2 → XP_011668882.1  TBC1 domain family member 5 isoform X1

      UniProtKB/TrEMBL
      A0A7M7HET8
      Conserved Domains (1) summary
      smart00164
      Location:111 → 420
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs

    2. XM_794243.4 → XP_799336.2  TBC1 domain family member 5 isoform X2

      UniProtKB/TrEMBL
      A0A7M7RHX7
      Conserved Domains (1) summary
      smart00164
      Location:111 → 413
      TBC; Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.