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LOC593255 vacuolar protein sorting-associated protein 13A [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 593255, updated on 14-Dec-2023

Summary

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Gene symbol
LOC593255
Gene description
vacuolar protein sorting-associated protein 13A
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC593255 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
72
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145607.1 (15540192..15628861, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577627.1 (206200..387797, complement)

NW_022145607.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 13A-like Neighboring gene vacuolar protein sorting-associated protein 13C Neighboring gene transcription termination factor 1 Neighboring gene dual specificity protein kinase TTK

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 13A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145607.1 Reference Spur_5.0 Primary Assembly

    Range
    15540192..15628861 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030994176.1 → XP_030850036.1  vacuolar protein sorting-associated protein 13A

    UniProtKB/TrEMBL
    A0A7M7PES6
    Conserved Domains (3) summary
    COG5043
    Location:3 → 1936
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    pfam06650
    Location:2586 → 2835
    SHR-BD; SHR-binding domain of vacuolar-sorting associated protein 13
    pfam16908
    Location:142 → 370
    VPS13; Vacuolar sorting-associated protein 13, N-terminal
Nucleotide Protein
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Molecular Biology Databases
Research Materials