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    LOC589328 phospholipid-transporting ATPase ABCA1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 589328, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC589328
    Gene description
    phospholipid-transporting ATPase ABCA1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC589328 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    53
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145609.1 (9171144..9246660)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003579653.1 (511..29389)

    NW_022145609.1Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase-related protein type 1 Neighboring gene tctex1 domain-containing protein 1-B-like Neighboring gene structural maintenance of chromosomes protein 2 Neighboring gene serine-rich adhesin for platelets-like Neighboring gene uncharacterized LOC105443279

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phospholipid-transporting ATPase ABCA1
    Names
    ATP-binding cassette sub-family A member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145609.1 Reference Spur_5.0 Primary Assembly

      Range
      9171144..9246660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030996815.1 → XP_030852675.1  phospholipid-transporting ATPase ABCA1

      UniProtKB/TrEMBL
      A0A7M7PJN5
      Conserved Domains (1) summary
      TIGR01257
      Location:1 → 2550
      rim_protein; retinal-specific rim ABC transporter
    Nucleotide Protein
    Heading Accession and Version

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