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LOC587871 leucine-rich repeat-containing protein 58 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 587871, updated on 14-Dec-2023

Summary

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Gene symbol
LOC587871
Gene description
leucine-rich repeat-containing protein 58
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC587871 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145611.1 (15217202..15233186, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577221.1 (271229..287925)

NW_022145611.1Genomic Context describing neighboring genes Neighboring gene SprT-like N-terminal domain Neighboring gene uncharacterized LOC115918254 Neighboring gene uncharacterized LOC115929516 Neighboring gene peroxisomal biogenesis factor 6 Neighboring gene potassium channel subfamily K member 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat-containing protein 58

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145611.1 Reference Spur_5.0 Primary Assembly

    Range
    15217202..15233186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030999382.1 → XP_030855242.1  leucine-rich repeat-containing protein 58

    UniProtKB/TrEMBL
    A0A7M7PR62
    Conserved Domains (2) summary
    COG4886
    Location:218 → 406
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:197 → 218
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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