U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.
    • Unknown field was ignored: [has_clinical].

    LOC586628 plexin-B1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 586628, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC586628
    Gene description
    plexin-B1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC586628 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145612.1 (1456426..1532423)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578072.1 (38282..86594, complement)

    NW_022145612.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115919261 Neighboring gene uncharacterized LOC105436514 Neighboring gene probable Werner syndrome ATP-dependent helicase homolog 1 Neighboring gene serine-rich adhesin for platelets-like Neighboring gene filamin-B-like Neighboring gene plexin-A4 Neighboring gene plexin-A2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables semaphorin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in semaphorin-plexin signaling pathway involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of semaphorin receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    plexin-B1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145612.1 Reference Spur_5.0 Primary Assembly

      Range
      1456426..1532423
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031000148.1 → XP_030856008.1  plexin-B1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7PUK9

    2. XM_031000145.1 → XP_030856005.1  plexin-B1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7PUK9
      Conserved Domains (8) summary
      cd11236
      Location:48 → 457
      Sema_plexin_like; The Sema domain, a protein interacting module, of Plexins and MET-like receptor tyrosine kinases
      smart00423
      Location:470 → 511
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00603
      Location:838 → 933
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      pfam01437
      Location:624 → 650
      PSI; Plexin repeat
      pfam17960
      Location:533 → 610
      TIG_plexin; TIG domain
      pfam18020
      Location:688 → 782
      TIG_2; TIG domain found in plexin
      cl02569
      Location:1307 → 1847
      RasGAP; Ras GTPase Activating Domain
      cl15674
      Location:934 → 1021
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    3. XM_031000146.1 → XP_030856006.1  plexin-B1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7PUK9
      Conserved Domains (8) summary
      cd11236
      Location:48 → 457
      Sema_plexin_like; The Sema domain, a protein interacting module, of Plexins and MET-like receptor tyrosine kinases
      smart00423
      Location:470 → 511
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00603
      Location:838 → 933
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      pfam01437
      Location:624 → 650
      PSI; Plexin repeat
      pfam17960
      Location:533 → 610
      TIG_plexin; TIG domain
      pfam18020
      Location:688 → 782
      TIG_2; TIG domain found in plexin
      cl02569
      Location:1307 → 1847
      RasGAP; Ras GTPase Activating Domain
      cl15674
      Location:934 → 1021
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    4. XM_031000149.1 → XP_030856009.1  plexin-B1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7PUK9

    5. XM_031000150.1 → XP_030856010.1  plexin-B1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7PUK9
      Conserved Domains (8) summary
      cd11236
      Location:48 → 457
      Sema_plexin_like; The Sema domain, a protein interacting module, of Plexins and MET-like receptor tyrosine kinases
      smart00423
      Location:470 → 511
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00603
      Location:838 → 933
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      pfam01437
      Location:624 → 650
      PSI; Plexin repeat
      pfam17960
      Location:533 → 610
      TIG_plexin; TIG domain
      pfam18020
      Location:688 → 782
      TIG_2; TIG domain found in plexin
      cl02569
      Location:1307 → 1847
      RasGAP; Ras GTPase Activating Domain
      cl15674
      Location:934 → 1021
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

    6. XM_031000144.1 → XP_030856004.1  plexin-B1 isoform X1

      UniProtKB/TrEMBL
      A0A7M7PTE1
      Conserved Domains (8) summary
      cd11236
      Location:80 → 489
      Sema_plexin_like; The Sema domain, a protein interacting module, of Plexins and MET-like receptor tyrosine kinases
      smart00423
      Location:502 → 543
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00603
      Location:870 → 965
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      pfam01437
      Location:656 → 682
      PSI; Plexin repeat
      pfam17960
      Location:565 → 642
      TIG_plexin; TIG domain
      pfam18020
      Location:720 → 814
      TIG_2; TIG domain found in plexin
      cl02569
      Location:1339 → 1879
      RasGAP; Ras GTPase Activating Domain
      cl15674
      Location:966 → 1053
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.