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    LOC585535 voltage-dependent L-type calcium channel subunit beta-1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 585535, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC585535
    Gene description
    voltage-dependent L-type calcium channel subunit beta-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    Also known as
    cacnb2
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC585535 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145613.1 (32205991..32230183)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578262.1 (214814..307225, complement)

    NW_022145613.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC584818 Neighboring gene uncharacterized LOC115920064 Neighboring gene putative gamma-glutamylcyclotransferase CG2811 Neighboring gene ubiquitin conjugating enzyme E2 F (putative)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables high voltage-gated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chemical synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuromuscular junction development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of voltage-gated calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of voltage-gated calcium channel complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    voltage-dependent L-type calcium channel subunit beta-1
    Names
    calcium channel, voltage-dependent, beta 2 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145613.1 Reference Spur_5.0 Primary Assembly

      Range
      32205991..32230183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030974528.1 → XP_030830388.1  voltage-dependent L-type calcium channel subunit beta-1

      UniProtKB/TrEMBL
      A0A7M7N2P0
      Conserved Domains (4) summary
      cd11863
      Location:52 → 113
      SH3_CACNB; Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta
      TIGR01622
      Location:525 → 649
      SF-CC1; splicing factor, CC1-like family
      pfam00625
      Location:214 → 395
      Guanylate_kin; Guanylate kinase
      pfam12052
      Location:7 → 48
      VGCC_beta4Aa_N; Voltage gated calcium channel subunit beta domain 4Aa N terminal
    Nucleotide Protein
    Heading Accession and Version

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