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LOC585208 uncharacterized LOC585208 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 585208, updated on 14-Dec-2023

Summary

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Gene symbol
LOC585208
Gene description
uncharacterized LOC585208
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC585208 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145601.1 (26004642..26015433, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577304.1 (466184..476970)

NW_022145601.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105443971 Neighboring gene putative per-hexamer repeat protein 5 Neighboring gene arylsulfatase J Neighboring gene cilia- and flagella-associated protein 74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2-oxoglutarate-dependent dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC585208

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145601.1 Reference Spur_5.0 Primary Assembly

    Range
    26004642..26015433 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030987148.1 → XP_030843008.1  uncharacterized protein LOC585208

    UniProtKB/TrEMBL
    A0A7M7NZI6
    Conserved Domains (1) summary
    pfam13621
    Location:56 → 283
    Cupin_8; Cupin-like domain

  2. XM_011677670.2 → XP_011675972.1  uncharacterized protein LOC585208

    UniProtKB/TrEMBL
    A0A7M7NZI6
    Conserved Domains (1) summary
    pfam13621
    Location:56 → 283
    Cupin_8; Cupin-like domain
Nucleotide Protein
Heading Accession and Version

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