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LOC582174 A-kinase anchor protein 9 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 582174, updated on 14-Dec-2023

Summary

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Gene symbol
LOC582174
Gene description
A-kinase anchor protein 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC582174 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
56
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145604.1 (26472295..26580856)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577751.1 (156510..256914, complement)

NW_022145604.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 249 Neighboring gene alphaP integrin Neighboring gene uncharacterized LOC105439177 Neighboring gene neurogenic differentiation factor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A-kinase anchor protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145604.1 Reference Spur_5.0 Primary Assembly

    Range
    26472295..26580856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030990731.1 → XP_030846591.1  A-kinase anchor protein 9 isoform X3

    UniProtKB/TrEMBL
    A0A7M7P5T4
    Conserved Domains (7) summary
    PTZ00121
    Location:2264 → 2923
    PTZ00121; MAEBL; Provisional
    COG0419
    Location:209 → 620
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02168
    Location:873 → 1652
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:443 → 1212
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam02463
    Location:1349 → 2187
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam10495
    Location:4875 → 4957
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
    pfam12128
    Location:4188 → 4826
    DUF3584; Protein of unknown function (DUF3584)

  2. XM_030990729.1 → XP_030846589.1  A-kinase anchor protein 9 isoform X1

    UniProtKB/TrEMBL
    A0A7M7P5T4
    Conserved Domains (7) summary
    PTZ00121
    Location:2264 → 2923
    PTZ00121; MAEBL; Provisional
    COG0419
    Location:209 → 620
    SbcC; DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]
    TIGR02168
    Location:873 → 1652
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:443 → 1212
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam02463
    Location:1349 → 2187
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam10495
    Location:4875 → 4957
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
    pfam12128
    Location:4188 → 4826
    DUF3584; Protein of unknown function (DUF3584)

  3. XM_030990732.1 → XP_030846592.1  A-kinase anchor protein 9 isoform X4

    UniProtKB/TrEMBL
    A0A7M7P800
    Conserved Domains (7) summary
    PTZ00121
    Location:2264 → 2923
    PTZ00121; MAEBL; Provisional
    PHA02562
    Location:251 → 510
    46; endonuclease subunit; Provisional
    TIGR02168
    Location:873 → 1652
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:443 → 1212
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    pfam02463
    Location:1349 → 2187
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam10495
    Location:4875 → 4957
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
    pfam12128
    Location:4188 → 4826
    DUF3584; Protein of unknown function (DUF3584)

  4. XM_030990730.1 → XP_030846590.1  A-kinase anchor protein 9 isoform X2

    UniProtKB/TrEMBL
    A0A7M7P5T4

  5. XM_030990733.1 → XP_030846593.1  A-kinase anchor protein 9 isoform X5

    UniProtKB/TrEMBL
    A0A7M7PBA5
    Conserved Domains (8) summary
    PTZ00121
    Location:2264 → 2923
    PTZ00121; MAEBL; Provisional
    PHA02562
    Location:251 → 510
    46; endonuclease subunit; Provisional
    COG1196
    Location:4141 → 4837
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:873 → 1652
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:443 → 1212
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    TIGR03752
    Location:2898 → 3019
    conj_TIGR03752; integrating conjugative element protein, PFL_4705 family
    pfam02463
    Location:1349 → 2187
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam10495
    Location:4868 → 4950
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein

  6. XM_030990735.1 → XP_030846595.1  A-kinase anchor protein 9 isoform X6

    UniProtKB/TrEMBL
    A0A7M7P624
    Conserved Domains (8) summary
    PTZ00121
    Location:2264 → 2923
    PTZ00121; MAEBL; Provisional
    PHA02562
    Location:251 → 510
    46; endonuclease subunit; Provisional
    TIGR02168
    Location:873 → 1652
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:443 → 1212
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
    TIGR03752
    Location:2898 → 3019
    conj_TIGR03752; integrating conjugative element protein, PFL_4705 family
    pfam02463
    Location:1349 → 2187
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam10495
    Location:4868 → 4950
    PACT_coil_coil; Pericentrin-AKAP-450 domain of centrosomal targeting protein
    pfam12128
    Location:4181 → 4819
    DUF3584; Protein of unknown function (DUF3584)

  7. XM_030990736.1 → XP_030846596.1  A-kinase anchor protein 9 isoform X7

    UniProtKB/TrEMBL
    A0A7M7T1C6
Nucleotide Protein
Heading Accession and Version

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