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LOC580275 transcription intermediary factor 1-alpha [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 580275, updated on 14-Dec-2023

Summary

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Gene symbol
LOC580275
Gene description
transcription intermediary factor 1-alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC580275 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145603.1 (26991373..27012549, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577515.1 (337448..360203)

NW_022145603.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27a Neighboring gene HSPA (Hsp70) binding protein 1 Neighboring gene echinoidin Neighboring gene MGAT4 family member C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription intermediary factor 1-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145603.1 Reference Spur_5.0 Primary Assembly

    Range
    26991373..27012549 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030989639.1 → XP_030845499.1  transcription intermediary factor 1-alpha

    UniProtKB/TrEMBL
    A0A7M7P8N9
    Conserved Domains (8) summary
    cd05502
    Location:1180 → 1288
    Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
    smart00502
    Location:208 → 333
    BBC; B-Box C-terminal domain
    cd15541
    Location:1115 → 1158
    PHD_TIF1_like; PHD finger found in the transcriptional intermediary factor 1 (TIF1) family and similar proteins
    pfam05109
    Location:495 → 768
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cd00162
    Location:19 → 76
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cd19775
    Location:162 → 204
    Bbox2_TIF1_C-VI; B-box-type 2 zinc finger found in transcription intermediary factor 1 (TIF1) family
    cl00034
    Location:108 → 150
    Bbox_SF; B-box-type zinc finger superfamily
    cl17238
    Location:19 → 77
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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