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LOC579693 integrator complex subunit 11 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579693, updated on 14-Dec-2023

Summary

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Gene symbol
LOC579693
Gene description
integrator complex subunit 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC579693 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145606.1 (14064880..14087616)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003579829.1 (72..23036, complement)

NW_022145606.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105442736 Neighboring gene ankyrin repeat domain-containing protein 50-like Neighboring gene APOBEC1 complementation factor Neighboring gene nuclear pore glycoprotein p62

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in snRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrator complex subunit 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145606.1 Reference Spur_5.0 Primary Assembly

    Range
    14064880..14087616
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030992814.1 → XP_030848674.1  integrator complex subunit 11 isoform X1

    UniProtKB/TrEMBL
    A0A7M7PCE4
    Conserved Domains (2) summary
    COG1236
    Location:4 → 446
    YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
    cd16291
    Location:6 → 204
    INTS11-like_MBL-fold; Integrator complex subunit 11, and related proteins; MBL-fold metallo-hydrolase domain

  2. XM_030992818.1 → XP_030848678.1  integrator complex subunit 11 isoform X4

    UniProtKB/TrEMBL
    A0A7M7NJA7
    Conserved Domains (1) summary
    COG1236
    Location:1 → 355
    YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]

  3. XM_030992816.1 → XP_030848676.1  integrator complex subunit 11 isoform X2

    UniProtKB/TrEMBL
    A0A7M7PDC2

  4. XM_030992817.1 → XP_030848677.1  integrator complex subunit 11 isoform X3

    UniProtKB/TrEMBL
    A0A7M7PA88
Nucleotide Protein
Heading Accession and Version

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