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LOC579234 phospholipase D1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 579234, updated on 14-Dec-2023

Summary

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Gene symbol
LOC579234
Gene description
phospholipase D1
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See LOC579234 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145558.1 (65299..103464, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003579380.1 (7864..37600)

NW_022145558.1Genomic Context describing neighboring genes Neighboring gene monocarboxylate transporter 12-like Neighboring gene monocarboxylate transporter 12-like Neighboring gene kinetochore protein spc24-like Neighboring gene protein O-mannosyl-transferase TMTC3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phospholipase D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145558.1 Reference Spur_5.0 Primary Assembly

    Range
    65299..103464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030993969.1 → XP_030849829.1  phospholipase D1 isoform X2

    UniProtKB/TrEMBL
    A0A7M7PE98
    Conserved Domains (1) summary
    PLN02866
    Location:254 → 1130
    PLN02866; phospholipase D

  2. XM_030993975.1 → XP_030849835.1  phospholipase D1 isoform X3

    UniProtKB/TrEMBL
    A0A7M7T2U9
    Conserved Domains (1) summary
    PLN02866
    Location:254 → 1130
    PLN02866; phospholipase D

  3. XM_030993982.1 → XP_030849842.1  phospholipase D1 isoform X4

    UniProtKB/TrEMBL
    A0A7M7PE98
    Conserved Domains (1) summary
    PLN02866
    Location:254 → 1130
    PLN02866; phospholipase D

  4. XM_030993963.1 → XP_030849823.1  phospholipase D1 isoform X1

    UniProtKB/TrEMBL
    A0A7M7T2U7
Nucleotide Protein
Heading Accession and Version

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