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    LOC579119 SET and MYND domain-containing protein 5 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 579119, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC579119
    Gene description
    SET and MYND domain-containing protein 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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    Genomic context

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    See LOC579119 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145600.1 (14007357..14023360, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578589.1 (121554..142315, complement)

    NW_022145600.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 125-like Neighboring gene WD repeat-containing protein 54-like Neighboring gene ADP-ribosylation factor-like protein 3 Neighboring gene HIG1 domain family member 2A, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H4K20 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SET and MYND domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145600.1 Reference Spur_5.0 Primary Assembly

      Range
      14007357..14023360 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030985646.1 → XP_030841506.1  SET and MYND domain-containing protein 5

      UniProtKB/TrEMBL
      A0A7M7NVV6
      Conserved Domains (1) summary
      cd10521
      Location:7 → 368
      SET_SMYD5; SET domain (including iSET domain and post-SET domain) found in SET and MYND domain-containing protein 5 (SMYD5) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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